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Choosing the Right Payment Processor for Your Retail Store and eCommerce Website
July 10, 2025 / 7 minute read / By Zoya Naeem
Blog
Choosing a payment processor is about more than just securing the lowest rates, it’s about ensuring every transaction is smooth, secure, and supported, whether it happens online or in your store.
With digital wallets and contactless payments now making up over 53% of in-store transactions in the US, retailers are under more pressure than ever to offer fast, secure, and flexible payment options across every touchpoint.
That’s exactly what this guide is here to walk you through. In the sections ahead, you’ll learn:
And while there’s no one-size-fits-all answer, understanding what to look for will help you confidently choose a processor that supports both your growth and your day-to-day retail activities.
Now, it’s tempting to zero in on the lowest rate when evaluating payment processors, but if the tech doesn’t play nicely with your retail setup, even a great rate can cost you more in lost time, failed transactions, or frustrated customers.
So, it’s wiser to start by thinking about compatibility.
Your processor should integrate cleanly with your POS system, not force you into clunky workarounds. If you’re using mobile devices in-store, confirm the processor supports the platforms your business relies on, whether that’s iOS, Android, or Windows. The last thing you want is to invest in hardware only to find out it doesn’t connect properly.
Then, there’s payment flexibility.
Today’s shoppers expect to pay with whatever’s in their pocket or on their phone. That means Apple Pay, Google Pay, contactless tap-to-pay, and even peer-to-peer methods in some cases. So, it’s more important than ever to make sure your processor supports these options and, more importantly, that your checkout experience actually makes them easy to use.
And when it comes to recurring billing or hassle-free returns? Tokenization is crucial. It keeps sensitive payment info secure, while letting your system recognize a returning card for quick refunds and repeat purchases without re-entering details.
So, before you chase the cheapest processing rate, check whether the tech will actually support your day-to-day operations. Because if it doesn’t work smoothly with your system, that ‘cheap’ option could quickly become the most expensive choice of all.
Once your tech is in place, the next thing to consider is how it handles compliance and security behind the scenes. Specifically, PCI compliance (the set of standards that govern how credit card data is handled).
The more your POS system touches that card data, the more responsibility (and liability) you carry. That’s why many retailers now look for setups that keep them completely out of scope, meaning the payment terminal and processor handle the data flow directly, not your POS system.
This approach simplifies your operations in a big way.
There’s less red tape, fewer security checklists to maintain, and if you’re ever audited, a much cleaner trail to follow. Even better, it reduces the risk of a data breach by keeping sensitive info out of your local systems altogether.
Once you’ve put the right safeguards in place to keep cardholder data out of your system, the next step is making the payment experience itself feel just as secure and effortless, for your customers, and your team.
That starts with the devices you’re using and how well they work with your POS.
A lot of retailers assume that as long as they have a payment terminal that accepts cards, they’re covered. But in reality, how your hardware and software work together can make or break the checkout experience. Especially today, when speed, mobility, and flexibility are just as important as security.
Let’s say you’re using mobile POS on the sales floor or at an event. Can your processor support iOS, Android, and Windows-based devices? Can your POS system and your processor handle Apple Pay and Google Pay without delays or compatibility gaps?
In-store checkout shouldn’t feel like stepping into the past, where terminals are fussy, and chip readers still ask customers to wait a few seconds too long. It should be tap-and-go. It should feel natural. And it should be just as smooth online, where things like placing Apple Pay right at the top of your checkout page (not buried under other options) can make the difference between a conversion and an abandoned cart.
If your hardware, POS, and processor aren’t aligned to support these flows, you’re not only slowing down checkout, you’re creating friction in the one moment that should feel effortless.
Creating fast, seamless checkout flows (whether in-store or online) also opens the door to new risks if the right protections aren’t in place. As more purchases shift to digital channels, fraud prevention becomes just as critical as payment acceptance, especially when it comes to eCommerce.
One threat retailers are seeing more of lately is credit card testing fraud.
Unlike traditional fraud, this doesn’t involve stolen goods or fake orders, it happens when fraudsters use your checkout as a testing ground to confirm which stolen cards are still active. And it often happens completely out of sight, within the payment processor’s own iframe, not on your eCommerce platform.
Because of this, many retailers don’t even realize it’s happening until it’s too late, after dozens or even hundreds of micro-transactions have gone through, racking up authorization fees and potential chargebacks. What’s even worse, these attacks can hurt your merchant reputation with card networks, making it harder to do business in the long run.
That’s why choosing a processor that actively monitors for and blocks card testing at the source, not just one that offloads responsibility, is essential.
But you know what, security is only half the equation. Because when something goes wrong or your business levels up, you’ll quickly learn that the cheapest payment processor isn’t always the smartest one.
Disputes happen.
Chargebacks pop up.
Tech breaks down.
And when it does, your processor shouldn’t feel like a black hole of support tickets. The difference between a missed deposit and a resolved issue often comes down to whether you can get a real person on the phone when you need them. Ideally, around the clock.
So, it’s important that you look for a partner that offers fast, clear dispute resolution, dedicated chargeback assistance, and quick access to your funds, with helpful reconciliation tools that keep your books clean.
And it’s not just about solving problems, it’s about growing with you. If you open new locations, expand to new markets, or adopt new fulfilment models like subscriptions or BOPIS (buy online, pick up in store), your processor shouldn’t slow you down. You want a solution that scales smoothly, supports international payments when you’re ready, and makes room for your growth, not one that needs to be replaced the moment you evolve.
Choosing the right payment processor is a choice that touches every part of your retail operation. From checkout speed to customer trust, from fraud prevention to future expansion, the right fit should feel like a partner.
At Celerant, we help you connect the dots. Our retail platform is built to integrate directly with a curated network of payment partners, ensuring your systems, devices, and customer experience work in sync, both online and in-store.
From PCI-compliant setups that reduce your liability to mobile-friendly terminals and secure eCommerce checkouts, we help you implement the technology and the partnerships that keep every transaction fast, flexible, and protected.